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@NationalGenomicsInfrastructure

National Genomics Infrastructure

The Swedish National Genomics Infrastructure (NGI), a technology platform at SciLifeLab, serving primarily Swedish academia.

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  1. miarka-provision miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    Jinja 1 16

  2. genomics-status genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    JavaScript 12 21

  3. ngi_reports ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    Python 5 14

  4. MultiQC_NGI MultiQC_NGI Public

    MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

    Python 4 11

  5. taca-ngi-pipeline taca-ngi-pipeline Public

    Forked from b97pla/taca-ngi-pipeline

    A TACA plugin adding functionality relevant for the ngi_pipeline

    Python 3 13

  6. TACA TACA Public

    Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    Python 14 17

Repositories

Showing 10 of 59 repositories
  • ngi-firn Public

    A laboratory freezer inventory management system created with Nuxt4, Vue and UnaUI.

    NationalGenomicsInfrastructure/ngi-firn's past year of commit activity
    TypeScript 2 MIT 2 0 0 Updated Nov 13, 2026
  • dataflow_testing Public
    NationalGenomicsInfrastructure/dataflow_testing's past year of commit activity
    Python 0 MIT 3 0 1 Updated Nov 13, 2026
  • Yggdrasil Public

    Automate anything - traceable plans, reproducible runs.

    NationalGenomicsInfrastructure/Yggdrasil's past year of commit activity
    Python 0 MIT 4 0 1 Updated Nov 13, 2026
  • miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    NationalGenomicsInfrastructure/miarka-provision's past year of commit activity
    Jinja 1 16 10 0 Updated Nov 13, 2026
  • scilifelab_epps Public Forked from Galithil/scilifelab_epps

    A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

    NationalGenomicsInfrastructure/scilifelab_epps's past year of commit activity
    Python 6 16 0 0 Updated Nov 13, 2026
  • demux_realm Public

    Helper scripts for demultiplexing

    NationalGenomicsInfrastructure/demux_realm's past year of commit activity
    Python 0 MIT 4 0 1 Updated Nov 12, 2026
  • spectacles Public

    API for a clearer look at clarity

    NationalGenomicsInfrastructure/spectacles's past year of commit activity
    Python 0 MIT 2 0 0 Updated Nov 12, 2026
  • fastq-purge Public

    Package for searching via bloom filter and discard reads using different fastq files

    NationalGenomicsInfrastructure/fastq-purge's past year of commit activity
    Rust 0 MIT 2 0 0 Updated Nov 12, 2026
  • genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    NationalGenomicsInfrastructure/genomics-status's past year of commit activity
    JavaScript 12 MIT 21 0 6 Updated Nov 12, 2026
  • StatusDB_NGI Public

    Holds test data to fire up a dev instance of statusdb

    NationalGenomicsInfrastructure/StatusDB_NGI's past year of commit activity
    JavaScript 0 MIT 4 0 1 Updated Nov 12, 2026
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