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Snakemake

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  1. snakemake snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    Python 2.9k 680

  2. snakemake-wrappers snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    Python 256 218

  3. snakefmt snakefmt Public

    The uncompromising Snakemake code formatter

    Python 197 32

  4. snakemake-github-action snakemake-github-action Public

    A Github action for running a Snakemake workflow

    64 14

  5. snakemake-executor-plugin-slurm snakemake-executor-plugin-slurm Public

    A Snakemake executor plugin for submitting jobs to a SLURM cluster

    Python 56 62

  6. snakemake-workflow-catalog snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    Python 37 12

Repositories

Showing 10 of 75 repositories
  • snakemake-tutorial-data Public

    Example data for the official Snakemake tutorial

    snakemake/snakemake-tutorial-data's past year of commit activity
    Dockerfile 9 25 0 3 Updated Nov 13, 2026
  • snakemake Public

    This is the development home of the workflow management system Snakemake. For general information, see

    snakemake/snakemake's past year of commit activity
    Python 2,898 MIT 680 996 (1 issue needs help) 143 Updated Nov 13, 2026
  • snakemake-wrappers Public

    This is the development home of the Snakemake wrapper repository, see

    snakemake/snakemake-wrappers's past year of commit activity
    Python 256 218 4 58 Updated Nov 13, 2026
  • snakemake-hpc-teaching-material Public
    snakemake/snakemake-hpc-teaching-material's past year of commit activity
    TeX 0 CC-BY-SA-4.0 2 3 2 Updated Nov 12, 2026
  • snakemake-workflow-catalog Public

    A statically generated catalog of available Snakemake workflows

    snakemake/snakemake-workflow-catalog's past year of commit activity
    Python 37 MIT 12 2 (1 issue needs help) 0 Updated Nov 10, 2026
  • snakemake-executor-plugin-aws-batch Public

    A Snakemake executor plugin for AWS Batch

    snakemake/snakemake-executor-plugin-aws-batch's past year of commit activity
    Python 12 MIT 14 6 3 Updated Nov 6, 2026
  • snakemake-software-deployment-plugin-container Public

    Run snakemake within a rootless container

    snakemake/snakemake-software-deployment-plugin-container's past year of commit activity
    Python 2 MIT 1 1 3 Updated Nov 6, 2026
  • snakemake-interface-common Public

    Common functions and classes for Snakemake and its plugins

    snakemake/snakemake-interface-common's past year of commit activity
    Python 0 MIT 7 6 4 Updated Nov 6, 2026
  • snakemake-report-plugin-rocrate Public

    Snakemake Report Plugin to automatically create Workflow Run RO-Crate after workflow runs holding all metadata of that workflow

    snakemake/snakemake-report-plugin-rocrate's past year of commit activity
    Python 3 MIT 3 2 0 Updated Nov 5, 2026
  • snakefmt Public

    The uncompromising Snakemake code formatter

    snakemake/snakefmt's past year of commit activity
    Python 197 MIT 32 3 12 Updated Nov 3, 2026
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